PF00342


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00342, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00342
Description Phosphoglucose isomerase

Occurence in the database

PF00342 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2418 FBDBKF_19525 11233 12885 1 pgi glucose-6-phosphate isomerase Morganella morganii S1
1 group_2418 EHELCC_16470 11233 12885 1 pgi glucose-6-phosphate isomerase Morganella morganii S2
2 group_2418 NLDBIP_16680 11233 12885 1 pgi glucose-6-phosphate isomerase Morganella morganii S4
3 group_2418 LHKJJB_16790 55625 57277 -1 pgi glucose-6-phosphate isomerase Morganella morganii S3
4 group_2418 HKOGLL_18825 11233 12885 1 pgi glucose-6-phosphate isomerase Morganella morganii S5
5 group_2418 F4V73_RS18605 61484 63130 -1 pgi glucose-6-phosphate isomerase Morganella psychrotolerans
6 group_2418 PMI_RS13575 3011309 3012955 -1 pgi glucose-6-phosphate isomerase Proteus mirabilis HI4320