PF00334


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00334, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00334
Description Nucleoside diphosphate kinase

Occurence in the database

PF00334 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_515 FBDBKF_01080 196733 197158 -1 ndk nucleoside-diphosphate kinase Morganella morganii S1
1 group_515 EHELCC_00465 111710 112135 1 ndk nucleoside-diphosphate kinase Morganella morganii S2
2 group_515 NLDBIP_02995 568001 568426 -1 ndk nucleoside-diphosphate kinase Morganella morganii S4
3 group_515 LHKJJB_04510 175242 175667 -1 ndk nucleoside-diphosphate kinase Morganella morganii S3
4 group_515 HKOGLL_02535 111915 112340 1 ndk nucleoside-diphosphate kinase Morganella morganii S5
5 group_515 F4V73_RS07150 1484605 1485030 -1 ndk nucleoside-diphosphate kinase Morganella psychrotolerans
6 group_515 PMI_RS09125 1986624 1987049 -1 ndk nucleoside-diphosphate kinase Proteus mirabilis HI4320