PF00290


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00290, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00290
Description Tryptophan synthase alpha chain

Occurence in the database

PF00290 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_949 FBDBKF_05180 44154 44960 1 trpA tryptophan synthase subunit alpha Morganella morganii S1
1 group_949 EHELCC_12410 136534 137340 -1 trpA tryptophan synthase subunit alpha Morganella morganii S2
2 group_949 NLDBIP_12750 136489 137295 -1 trpA tryptophan synthase subunit alpha Morganella morganii S4
3 group_949 LHKJJB_12610 136534 137340 -1 trpA tryptophan synthase subunit alpha Morganella morganii S3
4 group_949 HKOGLL_11225 136534 137340 -1 trpA tryptophan synthase subunit alpha Morganella morganii S5
5 group_949 F4V73_RS05635 1199383 1200189 1 trpA tryptophan synthase subunit alpha Morganella psychrotolerans
6 group_949 PMI_RS06505 1427341 1428150 1 trpA tryptophan synthase subunit alpha Proteus mirabilis HI4320