PF00288


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00288, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 26 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00288
Description GHMP kinases N terminal domain

Occurence in the database

PF00288 is associated with 26 different proteins (see tab "Protein list" and "Profile")
The 26 proteins are classified into 4 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_608 FBDBKF_01910 69388 70263 -1 ispE 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase Morganella morganii S1
1 group_1140 FBDBKF_06525 144728 145660 -1 thrB homoserine kinase Morganella morganii S1
2 group_2725 FBDBKF_07455 2365 3225 1 pduX PduX protein involved in propanediol utilization and related proteins Morganella morganii S1
3 group_2865 FBDBKF_11065 36621 37775 1 galK galactokinase Morganella morganii S1
4 group_608 EHELCC_02380 457208 458083 -1 ispE 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase Morganella morganii S2
5 group_2865 EHELCC_05160 21693 22847 -1 galK galactokinase Morganella morganii S2
6 group_1140 EHELCC_09570 145300 146232 -1 thrB homoserine kinase Morganella morganii S2
7 group_2725 EHELCC_17125 30015 30875 1 pduX PduX protein involved in propanediol utilization and related proteins Morganella morganii S2
8 group_608 NLDBIP_01080 222053 222928 1 ispE 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase Morganella morganii S4
9 group_2865 NLDBIP_05480 62758 63912 -1 galK galactokinase Morganella morganii S4
10 group_1140 NLDBIP_09950 145300 146232 -1 thrB homoserine kinase Morganella morganii S4
11 group_2725 NLDBIP_18505 30014 30874 1 pduX PduX protein involved in propanediol utilization and related proteins Morganella morganii S4
12 group_608 LHKJJB_00955 169757 170632 -1 ispE 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase Morganella morganii S3
13 group_2865 LHKJJB_02360 40282 41436 -1 galK galactokinase Morganella morganii S3
14 group_1140 LHKJJB_07805 71006 71938 1 thrB homoserine kinase Morganella morganii S3
15 group_2725 LHKJJB_09120 161455 162315 -1 pduX PduX protein involved in propanediol utilization and related proteins Morganella morganii S3
16 group_608 HKOGLL_00995 175268 176143 -1 ispE 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase Morganella morganii S5
17 group_1140 HKOGLL_07355 71006 71938 1 thrB homoserine kinase Morganella morganii S5
18 group_2725 HKOGLL_08670 161455 162315 -1 pduX PduX protein involved in propanediol utilization and related proteins Morganella morganii S5
19 group_2865 HKOGLL_15740 63722 64876 -1 galK galactokinase Morganella morganii S5
20 group_608 F4V73_RS04255 899606 900484 -1 ispE 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase Morganella psychrotolerans
21 group_2725 F4V73_RS13665 368980 369840 -1 GHMP kinase Morganella psychrotolerans
22 group_1140 F4V73_RS15405 67909 68841 1 thrB homoserine kinase Morganella psychrotolerans
23 group_1140 PMI_RS00010 2799 3728 1 thrB homoserine kinase Proteus mirabilis HI4320
24 group_608 PMI_RS05250 1147505 1148380 -1 ispE 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase Proteus mirabilis HI4320
25 group_2865 PMI_RS09605 2098110 2099282 -1 galK galactokinase Proteus mirabilis HI4320