PF00275


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00275, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00275
Description EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)

Occurence in the database

PF00275 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_723 FBDBKF_03185 40986 42251 -1 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase Morganella morganii S1
1 group_1227 FBDBKF_07150 101913 103190 1 aroA 3-phosphoshikimate 1-carboxyvinyltransferase Morganella morganii S1
2 group_1227 EHELCC_03820 82996 84273 -1 aroA 3-phosphoshikimate 1-carboxyvinyltransferase Morganella morganii S2
3 group_723 EHELCC_07350 204852 206117 1 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase Morganella morganii S2
4 group_1227 NLDBIP_03820 82792 84069 -1 aroA 3-phosphoshikimate 1-carboxyvinyltransferase Morganella morganii S4
5 group_723 NLDBIP_07675 204725 205990 1 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase Morganella morganii S4
6 group_723 LHKJJB_07210 168471 169736 1 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase Morganella morganii S3
7 group_1227 LHKJJB_09650 82906 84183 -1 aroA 3-phosphoshikimate 1-carboxyvinyltransferase Morganella morganii S3
8 group_723 HKOGLL_03720 63651 64916 -1 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase Morganella morganii S5
9 group_1227 HKOGLL_09325 106869 108146 1 aroA 3-phosphoshikimate 1-carboxyvinyltransferase Morganella morganii S5
10 group_1227 F4V73_RS01335 289751 291031 1 aroA 3-phosphoshikimate 1-carboxyvinyltransferase Morganella psychrotolerans
11 group_723 F4V73_RS11735 494889 496154 1 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase Morganella psychrotolerans
12 group_1227 PMI_RS03505 781284 782570 1 aroA 3-phosphoshikimate 1-carboxyvinyltransferase Proteus mirabilis HI4320
13 group_723 PMI_RS18215 3995041 3996303 1 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase Proteus mirabilis HI4320