PF00162


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00162, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00162
Description Phosphoglycerate kinase

Occurence in the database

PF00162 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1861 FBDBKF_13905 75071 76234 -1 pgk phosphoglycerate kinase Morganella morganii S1
1 group_1861 EHELCC_11575 159947 161110 -1 pgk phosphoglycerate kinase Morganella morganii S2
2 group_1861 NLDBIP_11920 159947 161110 -1 pgk phosphoglycerate kinase Morganella morganii S4
3 group_1861 LHKJJB_11780 159947 161110 -1 pgk phosphoglycerate kinase Morganella morganii S3
4 group_1861 HKOGLL_10390 159947 161110 -1 pgk phosphoglycerate kinase Morganella morganii S5
5 group_1861 F4V73_RS12770 153893 155059 -1 pgk phosphoglycerate kinase Morganella psychrotolerans
6 group_1861 PMI_RS01175 289702 290865 1 pgk phosphoglycerate kinase Proteus mirabilis HI4320