PF00080


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00080, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 6 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00080
Description Copper/zinc superoxide dismutase (SODC)

Occurence in the database

PF00080 is associated with 6 different proteins (see tab "Protein list" and "Profile")
The 6 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2907 FBDBKF_13330 43582 44106 -1 sodC superoxide dismutase [Cu-Zn] SodC Morganella morganii S1
1 group_2907 EHELCC_08765 231085 231609 1 sodC superoxide dismutase [Cu-Zn] SodC Morganella morganii S2
2 group_2907 NLDBIP_09090 231085 231609 1 sodC superoxide dismutase [Cu-Zn] SodC Morganella morganii S4
3 group_2907 LHKJJB_05175 25550 26074 -1 sodC superoxide dismutase [Cu-Zn] SodC Morganella morganii S3
4 group_2907 HKOGLL_05740 215676 216200 1 sodC superoxide dismutase [Cu-Zn] SodC Morganella morganii S5
5 group_2907 PMI_RS06430 1410453 1410977 -1 sodC superoxide dismutase family protein Proteus mirabilis HI4320