PF00044


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00044, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00044
Description Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Occurence in the database

PF00044 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_984 FBDBKF_05435 95745 96740 1 gapA glyceraldehyde-3-phosphate dehydrogenase Morganella morganii S1
1 group_1862 FBDBKF_13910 76304 77326 -1 epd erythrose-4-phosphate dehydrogenase Morganella morganii S1
2 group_1862 EHELCC_11580 161180 162202 -1 epd erythrose-4-phosphate dehydrogenase Morganella morganii S2
3 group_984 EHELCC_12155 84754 85749 -1 gapA glyceraldehyde-3-phosphate dehydrogenase Morganella morganii S2
4 group_1862 NLDBIP_11925 161180 162202 -1 epd erythrose-4-phosphate dehydrogenase Morganella morganii S4
5 group_984 NLDBIP_12495 84709 85704 -1 gapA glyceraldehyde-3-phosphate dehydrogenase Morganella morganii S4
6 group_1862 LHKJJB_11785 161180 162202 -1 epd erythrose-4-phosphate dehydrogenase Morganella morganii S3
7 group_984 LHKJJB_12355 84754 85749 -1 gapA glyceraldehyde-3-phosphate dehydrogenase Morganella morganii S3
8 group_1862 HKOGLL_10395 161180 162202 -1 epd erythrose-4-phosphate dehydrogenase Morganella morganii S5
9 group_984 HKOGLL_10970 84754 85749 -1 gapA glyceraldehyde-3-phosphate dehydrogenase Morganella morganii S5
10 group_984 F4V73_RS03860 818047 819042 -1 gapA glyceraldehyde-3-phosphate dehydrogenase Morganella psychrotolerans
11 group_1862 F4V73_RS12775 155127 156149 -1 epd erythrose-4-phosphate dehydrogenase Morganella psychrotolerans
12 group_1862 PMI_RS01170 288580 289599 1 epd erythrose-4-phosphate dehydrogenase Proteus mirabilis HI4320
13 group_984 PMI_RS07290 1595947 1596942 1 gapA glyceraldehyde-3-phosphate dehydrogenase Proteus mirabilis HI4320