COG5405


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG5405, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description ATP-dependent protease HslVU (ClpYQ), peptidase subunit
Function(s) descr. Posttranslational modification, protein turnover, chaperones (O)

Occurence in the database

COG5405 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1758 FBDBKF_12245 109758 110288 1 hslV ATP-dependent protease subunit HslV Morganella morganii S1
1 group_1758 EHELCC_14060 24417 24947 -1 hslV ATP-dependent protease subunit HslV Morganella morganii S2
2 group_1758 NLDBIP_15155 28354 28884 -1 hslV ATP-dependent protease subunit HslV Morganella morganii S4
3 group_1758 LHKJJB_15455 109758 110288 1 hslV ATP-dependent protease subunit HslV Morganella morganii S3
4 group_1758 HKOGLL_14575 96421 96951 1 hslV ATP-dependent protease subunit HslV Morganella morganii S5
5 group_1758 F4V73_RS17075 43464 43994 1 hslV ATP-dependent protease subunit HslV Morganella psychrotolerans
6 group_1758 PMI_RS15905 3530402 3530932 -1 hslV ATP-dependent protease subunit HslV Proteus mirabilis HI4320