COG4988


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG4988, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components
Function(s) descr. Energy production and conversion (C)
Posttranslational modification, protein turnover, chaperones (O)

Occurence in the database

COG4988 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1217 FBDBKF_07085 81656 83425 -1 cydD cysteine/glutathione ABC transporter permease/ATP-binding protein CydD Morganella morganii S1
1 group_1217 EHELCC_03885 102761 104530 1 cydD cysteine/glutathione ABC transporter permease/ATP-binding protein CydD Morganella morganii S2
2 group_1217 NLDBIP_03885 102557 104326 1 cydD cysteine/glutathione ABC transporter permease/ATP-binding protein CydD Morganella morganii S4
3 group_1217 LHKJJB_09715 102671 104440 1 cydD cysteine/glutathione ABC transporter permease/ATP-binding protein CydD Morganella morganii S3
4 group_1217 HKOGLL_09260 86612 88381 -1 cydD cysteine/glutathione ABC transporter permease/ATP-binding protein CydD Morganella morganii S5
5 group_1217 F4V73_RS01270 269410 271179 -1 cydD cysteine/glutathione ABC transporter permease/ATP-binding protein CydD Morganella psychrotolerans
6 group_1217 PMI_RS03415 754583 756352 -1 cydD cysteine/glutathione ABC transporter permease/ATP-binding protein CydD Proteus mirabilis HI4320