COG4988
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG4988, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries
within the database. 7 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.
Description
Description | ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components |
---|---|
Function(s) descr. | Energy production and conversion (C) Posttranslational modification, protein turnover, chaperones (O) |
Occurence in the database
COG4988 is associated with 7 different proteins (see tab "Protein list" and "Profile") |
The 7 proteins are classified into 1 different orthogroup(s) |
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_1217 | FBDBKF_07085 | 81656 | 83425 | -1 | cydD | cysteine/glutathione ABC transporter permease/ATP-binding protein CydD | Morganella morganii S1 |
1 | group_1217 | EHELCC_03885 | 102761 | 104530 | 1 | cydD | cysteine/glutathione ABC transporter permease/ATP-binding protein CydD | Morganella morganii S2 |
2 | group_1217 | NLDBIP_03885 | 102557 | 104326 | 1 | cydD | cysteine/glutathione ABC transporter permease/ATP-binding protein CydD | Morganella morganii S4 |
3 | group_1217 | LHKJJB_09715 | 102671 | 104440 | 1 | cydD | cysteine/glutathione ABC transporter permease/ATP-binding protein CydD | Morganella morganii S3 |
4 | group_1217 | HKOGLL_09260 | 86612 | 88381 | -1 | cydD | cysteine/glutathione ABC transporter permease/ATP-binding protein CydD | Morganella morganii S5 |
5 | group_1217 | F4V73_RS01270 | 269410 | 271179 | -1 | cydD | cysteine/glutathione ABC transporter permease/ATP-binding protein CydD | Morganella psychrotolerans |
6 | group_1217 | PMI_RS03415 | 754583 | 756352 | -1 | cydD | cysteine/glutathione ABC transporter permease/ATP-binding protein CydD | Proteus mirabilis HI4320 |