COG4221


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG4221, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 13 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description NADP-dependent 3-hydroxy acid dehydrogenase YdfG
Function(s) descr. Energy production and conversion (C)

Occurence in the database

COG4221 is associated with 13 different proteins (see tab "Protein list" and "Profile")
The 13 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_693 FBDBKF_02950 284805 285554 1 ydfG bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG Morganella morganii S1
1 group_2824 FBDBKF_10055 104708 105427 -1 ydfG NADP-dependent 3-hydroxy acid dehydrogenase YdfG Morganella morganii S1
2 group_693 EHELCC_03420 672625 673374 1 ydfG bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG Morganella morganii S2
3 group_2824 EHELCC_04855 296673 297392 -1 ydfG NADP-dependent 3-hydroxy acid dehydrogenase YdfG Morganella morganii S2
4 group_693 NLDBIP_00040 6762 7511 -1 ydfG bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG Morganella morganii S4
5 group_2824 NLDBIP_04855 296469 297188 -1 ydfG NADP-dependent 3-hydroxy acid dehydrogenase YdfG Morganella morganii S4
6 group_693 LHKJJB_01995 385174 385923 1 ydfG bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG Morganella morganii S3
7 group_2824 LHKJJB_13775 38190 38909 1 ydfG NADP-dependent 3-hydroxy acid dehydrogenase YdfG Morganella morganii S3
8 group_693 HKOGLL_02035 390685 391434 1 ydfG bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG Morganella morganii S5
9 group_2824 HKOGLL_12760 105489 106208 -1 ydfG NADP-dependent 3-hydroxy acid dehydrogenase YdfG Morganella morganii S5
10 group_2824 F4V73_RS00280 66258 66977 1 SDR family oxidoreductase Morganella psychrotolerans
11 group_693 F4V73_RS05390 1144891 1145640 1 ydfG bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG Morganella psychrotolerans
12 group_693 PMI_RS06215 1362212 1362961 1 ydfG bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG Proteus mirabilis HI4320