COG3190


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3190, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Flagellar biogenesis protein FliO
Function(s) descr. Cell motility (N)

Occurence in the database

COG3190 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_459 FBDBKF_00635 105827 106294 1 fliO flagellar biosynthetic protein FliO Morganella morganii S1
1 group_459 EHELCC_00910 202574 203041 -1 fliO flagellar biosynthetic protein FliO Morganella morganii S2
2 group_459 NLDBIP_02550 477095 477562 1 fliO flagellar biosynthetic protein FliO Morganella morganii S4
3 group_459 LHKJJB_04065 84336 84803 1 fliO flagellar biosynthetic protein FliO Morganella morganii S3
4 group_459 HKOGLL_02980 202779 203246 -1 fliO flagellar biosynthetic protein FliO Morganella morganii S5
5 group_459 F4V73_RS06645 1382742 1383194 1 fliO flagellar biosynthetic protein FliO Morganella psychrotolerans
6 group_459 PMI_RS08005 1752049 1752495 1 fliO flagellar biosynthetic protein FliO Proteus mirabilis HI4320