COG3180


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3180, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 6 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Uncharacterized membrane protein AbrB, regulator of aidB expression
Function(s) descr. General function prediction only (R)

Occurence in the database

COG3180 is associated with 6 different proteins (see tab "Protein list" and "Profile")
The 6 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2774 FBDBKF_07900 109113 110141 1 abrB Uncharacterized membrane protein AbrB, regulator of aidB expression Morganella morganii S1
1 group_2774 EHELCC_13730 83307 84335 1 abrB Uncharacterized membrane protein AbrB, regulator of aidB expression Morganella morganii S2
2 group_2774 NLDBIP_14175 104182 105210 1 abrB Uncharacterized membrane protein AbrB, regulator of aidB expression Morganella morganii S4
3 group_2774 LHKJJB_08675 54539 55567 -1 abrB Uncharacterized membrane protein AbrB, regulator of aidB expression Morganella morganii S3
4 group_2774 HKOGLL_08225 54539 55567 -1 abrB Uncharacterized membrane protein AbrB, regulator of aidB expression Morganella morganii S5
5 group_2774 PMI_RS00760 194015 195055 1 AbrB family transcriptional regulator Proteus mirabilis HI4320