COG3161


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3161, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description 4-hydroxybenzoate synthetase (chorismate-pyruvate lyase)
Function(s) descr. Coenzyme transport and metabolism (H)

Occurence in the database

COG3161 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2419 FBDBKF_19530 13043 13543 1 ubiC chorismate lyase Morganella morganii S1
1 group_2419 EHELCC_16475 13043 13543 1 ubiC chorismate lyase Morganella morganii S2
2 group_2419 NLDBIP_16685 13043 13543 1 ubiC chorismate lyase Morganella morganii S4
3 group_2419 LHKJJB_16785 54967 55467 -1 ubiC chorismate lyase Morganella morganii S3
4 group_2419 HKOGLL_18830 13043 13543 1 ubiC chorismate lyase Morganella morganii S5
5 group_2419 F4V73_RS18595 58800 59324 -1 ubiC chorismate lyase Morganella psychrotolerans
6 group_2419 PMI_RS13570 3010578 3011087 -1 ubiC chorismate lyase Proteus mirabilis HI4320