COG3142


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3142, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Copper homeostasis protein CutC
Function(s) descr. Inorganic ion transport and metabolism (P)

Occurence in the database

COG3142 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_627 FBDBKF_02015 91091 91843 1 cutC copper homeostasis protein CutC Morganella morganii S1
1 group_627 EHELCC_02485 478911 479663 1 cutC copper homeostasis protein CutC Morganella morganii S2
2 group_627 NLDBIP_00975 200473 201225 -1 cutC copper homeostasis protein CutC Morganella morganii S4
3 group_627 LHKJJB_01060 191460 192212 1 cutC copper homeostasis protein CutC Morganella morganii S3
4 group_627 HKOGLL_01100 196971 197723 1 cutC copper homeostasis protein CutC Morganella morganii S5
5 group_627 F4V73_RS04380 926540 927292 1 cutC copper homeostasis protein CutC Morganella psychrotolerans
6 group_627 PMI_RS05360 1172535 1173287 1 cutC copper homeostasis protein CutC Proteus mirabilis HI4320