COG3135


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3135, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 6 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Predicted benzoate:H+ symporter BenE
Function(s) descr. Secondary metabolites biosynthesis, transport and catabolism (Q)

Occurence in the database

COG3135 is associated with 6 different proteins (see tab "Protein list" and "Profile")
The 6 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2883 FBDBKF_11565 109466 110602 1 benE putative benzoate:H+ symporter BenE Morganella morganii S1
1 group_2883 EHELCC_17485 7809 8945 1 benE putative benzoate:H+ symporter BenE Morganella morganii S2
2 group_2883 NLDBIP_18695 8556 9692 1 benE putative benzoate:H+ symporter BenE Morganella morganii S4
3 group_2883 LHKJJB_17925 7809 8945 1 benE putative benzoate:H+ symporter BenE Morganella morganii S3
4 group_2883 HKOGLL_18725 15286 16422 -1 benE putative benzoate:H+ symporter BenE Morganella morganii S5
5 group_2883 F4V73_RS08110 1683099 1684274 -1 benzoate/H(+) symporter BenE family transporter Morganella psychrotolerans