COG3045


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3045, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Periplasmic catabolite regulation protein CreA (function unknown)
Function(s) descr. Signal transduction mechanisms (T)

Occurence in the database

COG3045 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1143 FBDBKF_06545 149707 150198 -1 creA protein CreA Morganella morganii S1
1 group_1143 EHELCC_09590 150279 150770 -1 creA protein CreA Morganella morganii S2
2 group_1143 NLDBIP_09970 150279 150770 -1 creA protein CreA Morganella morganii S4
3 group_1143 LHKJJB_07785 66468 66959 1 creA protein CreA Morganella morganii S3
4 group_1143 HKOGLL_07335 66468 66959 1 creA protein CreA Morganella morganii S5
5 group_1143 F4V73_RS15390 63295 63786 1 creA protein CreA Morganella psychrotolerans
6 group_1143 PMI_RS18500 4061748 4062224 1 creA protein CreA Proteus mirabilis HI4320