COG2982


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2982, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Uncharacterized conserved protein AsmA involved in outer membrane biogenesis
Function(s) descr. Cell wall/membrane/envelope biogenesis (M)

Occurence in the database

COG2982 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1187 FBDBKF_06845 32858 34720 1 asmA outer membrane assembly protein AsmA Morganella morganii S1
1 group_1729 FBDBKF_12075 67857 69620 1 asmA AsmA domain-containing protein Morganella morganii S1
2 group_1187 EHELCC_04125 151466 153328 -1 asmA outer membrane assembly protein AsmA Morganella morganii S2
3 group_1729 EHELCC_14230 65085 66848 -1 asmA AsmA domain-containing protein Morganella morganii S2
4 group_1187 NLDBIP_04125 151262 153124 -1 asmA outer membrane assembly protein AsmA Morganella morganii S4
5 group_1729 NLDBIP_15325 69022 70785 -1 asmA AsmA domain-containing protein Morganella morganii S4
6 group_1187 LHKJJB_09955 151376 153238 -1 asmA outer membrane assembly protein AsmA Morganella morganii S3
7 group_1729 LHKJJB_15285 67857 69620 1 asmA AsmA domain-containing protein Morganella morganii S3
8 group_1187 HKOGLL_09020 37814 39676 1 asmA outer membrane assembly protein AsmA Morganella morganii S5
9 group_1729 HKOGLL_14405 54520 56283 1 asmA AsmA domain-containing protein Morganella morganii S5
10 group_1187 F4V73_RS00995 211519 213393 1 asmA outer membrane assembly protein AsmA Morganella psychrotolerans
11 group_1729 F4V73_RS14570 144619 146382 -1 hypothetical protein Morganella psychrotolerans
12 group_1187 PMI_RS03205 707146 709077 1 asmA outer membrane assembly protein AsmA Proteus mirabilis HI4320
13 group_1729 PMI_RS14185 3149620 3151308 1 hypothetical protein Proteus mirabilis HI4320