COG2900


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2900, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Uncharacterized coiled-coil protein SlyX (sensitive to lysis X)
Function(s) descr. Function unknown (S)

Occurence in the database

COG2900 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1688 FBDBKF_11775 6635 6853 1 slyX Uncharacterized coiled-coil protein SlyX (sensitive to lysis X) Morganella morganii S1
1 group_1688 EHELCC_14530 127852 128070 -1 slyX Uncharacterized coiled-coil protein SlyX (sensitive to lysis X) Morganella morganii S2
2 group_1688 NLDBIP_15625 131789 132007 -1 slyX Uncharacterized coiled-coil protein SlyX (sensitive to lysis X) Morganella morganii S4
3 group_1688 LHKJJB_14985 6635 6853 1 slyX Uncharacterized coiled-coil protein SlyX (sensitive to lysis X) Morganella morganii S3
4 group_1688 HKOGLL_19300 6498 6716 -1 slyX Uncharacterized coiled-coil protein SlyX (sensitive to lysis X) Morganella morganii S5
5 group_1688 F4V73_RS14880 211413 211631 -1 SlyX family protein Morganella psychrotolerans
6 group_1688 PMI_RS13840 3074887 3075105 1 SlyX family protein Proteus mirabilis HI4320