COG2877


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2877, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase
Function(s) descr. Cell wall/membrane/envelope biogenesis (M)

Occurence in the database

COG2877 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_614 FBDBKF_01940 75245 76096 1 kdsA 3-deoxy-8-phosphooctulonate synthase Morganella morganii S1
1 group_614 EHELCC_02410 463065 463916 1 kdsA 3-deoxy-8-phosphooctulonate synthase Morganella morganii S2
2 group_614 NLDBIP_01050 216220 217071 -1 kdsA 3-deoxy-8-phosphooctulonate synthase Morganella morganii S4
3 group_614 LHKJJB_00985 175614 176465 1 kdsA 3-deoxy-8-phosphooctulonate synthase Morganella morganii S3
4 group_614 HKOGLL_01025 181125 181976 1 kdsA 3-deoxy-8-phosphooctulonate synthase Morganella morganii S5
5 group_614 F4V73_RS04285 905575 906429 1 kdsA 3-deoxy-8-phosphooctulonate synthase Morganella psychrotolerans
6 group_614 PMI_RS05280 1153327 1154181 1 kdsA 3-deoxy-8-phosphooctulonate synthase Proteus mirabilis HI4320