COG2872


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2872, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 6 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Ser-tRNA(Ala) deacylase AlaX (editing enzyme)
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG2872 is associated with 6 different proteins (see tab "Protein list" and "Profile")
The 6 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3107 FBDBKF_19630 10087 10719 -1 alaX Ser-tRNA(Ala) deacylase AlaX (editing enzyme) Morganella morganii S1
1 group_3107 EHELCC_16920 45314 45946 -1 alaX Ser-tRNA(Ala) deacylase AlaX (editing enzyme) Morganella morganii S2
2 group_3107 NLDBIP_17530 9820 10452 1 alaX Ser-tRNA(Ala) deacylase AlaX (editing enzyme) Morganella morganii S4
3 group_3107 LHKJJB_17450 9820 10452 1 alaX Ser-tRNA(Ala) deacylase AlaX (editing enzyme) Morganella morganii S3
4 group_3107 HKOGLL_17265 9820 10452 1 alaX Ser-tRNA(Ala) deacylase AlaX (editing enzyme) Morganella morganii S5
5 group_3107 F4V73_RS10425 197681 198313 -1 metal-dependent hydrolase Morganella psychrotolerans