COG2425


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2425, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Uncharacterized conserved protein, contains a von Willebrand factor type A (vWA) domain
Function(s) descr. Function unknown (S)

Occurence in the database

COG2425 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2059 FBDBKF_15430 11640 13094 1 viaA ATPase RavA stimulator ViaA Morganella morganii S1
1 group_2059 EHELCC_15790 10940 12394 1 viaA ATPase RavA stimulator ViaA Morganella morganii S2
2 group_2059 NLDBIP_16580 68269 69723 -1 viaA ATPase RavA stimulator ViaA Morganella morganii S4
3 group_2059 LHKJJB_16225 10940 12394 1 viaA ATPase RavA stimulator ViaA Morganella morganii S3
4 group_2059 HKOGLL_15995 10940 12394 1 viaA ATPase RavA stimulator ViaA Morganella morganii S5
5 group_2059 F4V73_RS17715 184041 185495 -1 viaA ATPase RavA stimulator ViaA Morganella psychrotolerans
6 group_4356 PMI_RS02745 597215 598369 -1 VWA domain-containing protein Proteus mirabilis HI4320
7 group_2059 PMI_RS15110 3354288 3355745 1 viaA ATPase RavA stimulator ViaA Proteus mirabilis HI4320