COG2365


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2365, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Protein tyrosine/serine phosphatase Oca4
Function(s) descr. Signal transduction mechanisms (T)

Occurence in the database

COG2365 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2219 FBDBKF_16955 18585 19367 -1 oca4 Protein tyrosine/serine phosphatase Oca4 Morganella morganii S1
1 group_2219 EHELCC_16635 49143 49925 1 oca4 Protein tyrosine/serine phosphatase Oca4 Morganella morganii S2
2 group_2219 NLDBIP_16845 49143 49925 1 oca4 Protein tyrosine/serine phosphatase Oca4 Morganella morganii S4
3 group_2219 LHKJJB_16625 18585 19367 -1 oca4 Protein tyrosine/serine phosphatase Oca4 Morganella morganii S3
4 group_2219 HKOGLL_17590 18585 19367 -1 oca4 Protein tyrosine/serine phosphatase Oca4 Morganella morganii S5
5 group_2219 F4V73_RS18425 18734 19513 -1 tyrosine-protein phosphatase Morganella psychrotolerans
6 group_2219 PMI_RS17560 3855367 3856149 1 tyrosine-protein phosphatase Proteus mirabilis HI4320