COG2345


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2345, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 6 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Predicted transcriptional regulator, ArsR family
Function(s) descr. Transcription (K)

Occurence in the database

COG2345 is associated with 6 different proteins (see tab "Protein list" and "Profile")
The 6 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2961 FBDBKF_16170 22989 23648 -1 arsR putative transcriptional regulator, ArsR family Morganella morganii S1
1 group_2961 EHELCC_16205 22989 23648 -1 arsR putative transcriptional regulator, ArsR family Morganella morganii S2
2 group_2961 NLDBIP_17135 38522 39181 1 arsR putative transcriptional regulator, ArsR family Morganella morganii S4
3 group_2961 LHKJJB_17055 41624 42283 1 arsR putative transcriptional regulator, ArsR family Morganella morganii S3
4 group_2961 HKOGLL_16785 22989 23648 -1 arsR putative transcriptional regulator, ArsR family Morganella morganii S5
5 group_2961 F4V73_RS17455 121978 122637 1 metalloregulator ArsR/SmtB family transcription factor Morganella psychrotolerans