COG2265


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2265, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 22 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG2265 is associated with 22 different proteins (see tab "Protein list" and "Profile")
The 22 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_289 FBDBKF_07000 63975 65099 1 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC Morganella morganii S1
1 group_1641 FBDBKF_10850 137213 138313 -1 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA Morganella morganii S1
2 group_1874 FBDBKF_13990 94602 95984 -1 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD Morganella morganii S1
3 group_289 EHELCC_03970 121087 122211 -1 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC Morganella morganii S2
4 group_1874 EHELCC_11665 179478 180860 -1 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD Morganella morganii S2
5 group_1641 EHELCC_19435 7999 9099 -1 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA Morganella morganii S2
6 group_289 NLDBIP_03970 120883 122007 -1 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC Morganella morganii S4
7 group_1874 NLDBIP_12005 179478 180860 -1 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD Morganella morganii S4
8 group_1641 NLDBIP_15015 137203 138303 -1 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA Morganella morganii S4
9 group_289 LHKJJB_09800 120997 122121 -1 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC Morganella morganii S3
10 group_1874 LHKJJB_11865 179478 180860 -1 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD Morganella morganii S3
11 group_1641 LHKJJB_14330 3423 4523 1 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA Morganella morganii S3
12 group_289 HKOGLL_09175 68931 70055 1 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC Morganella morganii S5
13 group_1874 HKOGLL_10480 179478 180860 -1 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD Morganella morganii S5
14 group_1641 HKOGLL_12950 3423 4523 1 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA Morganella morganii S5
15 group_289 HKOGLL_19745 34 249 1 hypothetical protein Morganella morganii S5
16 group_289 F4V73_RS01190 251541 252665 1 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC Morganella psychrotolerans
17 group_1874 F4V73_RS12845 172118 173458 -1 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD Morganella psychrotolerans
18 group_1641 F4V73_RS16900 3301 4398 1 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA Morganella psychrotolerans
19 group_1874 PMI_RS01040 256105 257430 1 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD Proteus mirabilis HI4320
20 group_289 PMI_RS03335 736283 737416 1 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC Proteus mirabilis HI4320
21 group_1641 PMI_RS16045 3565442 3566539 -1 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA Proteus mirabilis HI4320