COG2265
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2265, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries
within the database. 22 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.
Description
Description |
tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family |
Function(s) descr. |
Translation, ribosomal structure and biogenesis (J) |
Occurence in the database
COG2265 is associated with 22 different proteins (see tab "Protein list" and "Profile") |
The 22 proteins are classified into 3 different orthogroup(s)
|
# |
Orthogroup |
Locus |
Start |
Stop |
S. |
Gene |
Product |
Organism |
0 |
group_289 |
FBDBKF_07000 |
63975 |
65099 |
1 |
rlmC |
23S rRNA (uracil(747)-C(5))-methyltransferase RlmC |
Morganella morganii S1 |
1 |
group_1641 |
FBDBKF_10850 |
137213 |
138313 |
-1 |
trmA |
tRNA (uridine(54)-C5)-methyltransferase TrmA |
Morganella morganii S1 |
2 |
group_1874 |
FBDBKF_13990 |
94602 |
95984 |
-1 |
rlmD |
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD |
Morganella morganii S1 |
3 |
group_289 |
EHELCC_03970 |
121087 |
122211 |
-1 |
rlmC |
23S rRNA (uracil(747)-C(5))-methyltransferase RlmC |
Morganella morganii S2 |
4 |
group_1874 |
EHELCC_11665 |
179478 |
180860 |
-1 |
rlmD |
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD |
Morganella morganii S2 |
5 |
group_1641 |
EHELCC_19435 |
7999 |
9099 |
-1 |
trmA |
tRNA (uridine(54)-C5)-methyltransferase TrmA |
Morganella morganii S2 |
6 |
group_289 |
NLDBIP_03970 |
120883 |
122007 |
-1 |
rlmC |
23S rRNA (uracil(747)-C(5))-methyltransferase RlmC |
Morganella morganii S4 |
7 |
group_1874 |
NLDBIP_12005 |
179478 |
180860 |
-1 |
rlmD |
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD |
Morganella morganii S4 |
8 |
group_1641 |
NLDBIP_15015 |
137203 |
138303 |
-1 |
trmA |
tRNA (uridine(54)-C5)-methyltransferase TrmA |
Morganella morganii S4 |
9 |
group_289 |
LHKJJB_09800 |
120997 |
122121 |
-1 |
rlmC |
23S rRNA (uracil(747)-C(5))-methyltransferase RlmC |
Morganella morganii S3 |
10 |
group_1874 |
LHKJJB_11865 |
179478 |
180860 |
-1 |
rlmD |
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD |
Morganella morganii S3 |
11 |
group_1641 |
LHKJJB_14330 |
3423 |
4523 |
1 |
trmA |
tRNA (uridine(54)-C5)-methyltransferase TrmA |
Morganella morganii S3 |
12 |
group_289 |
HKOGLL_09175 |
68931 |
70055 |
1 |
rlmC |
23S rRNA (uracil(747)-C(5))-methyltransferase RlmC |
Morganella morganii S5 |
13 |
group_1874 |
HKOGLL_10480 |
179478 |
180860 |
-1 |
rlmD |
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD |
Morganella morganii S5 |
14 |
group_1641 |
HKOGLL_12950 |
3423 |
4523 |
1 |
trmA |
tRNA (uridine(54)-C5)-methyltransferase TrmA |
Morganella morganii S5 |
15 |
group_289 |
HKOGLL_19745 |
34 |
249 |
1 |
|
hypothetical protein |
Morganella morganii S5 |
16 |
group_289 |
F4V73_RS01190 |
251541 |
252665 |
1 |
rlmC |
23S rRNA (uracil(747)-C(5))-methyltransferase RlmC |
Morganella psychrotolerans |
17 |
group_1874 |
F4V73_RS12845 |
172118 |
173458 |
-1 |
rlmD |
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD |
Morganella psychrotolerans |
18 |
group_1641 |
F4V73_RS16900 |
3301 |
4398 |
1 |
trmA |
tRNA (uridine(54)-C5)-methyltransferase TrmA |
Morganella psychrotolerans |
19 |
group_1874 |
PMI_RS01040 |
256105 |
257430 |
1 |
rlmD |
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD |
Proteus mirabilis HI4320 |
20 |
group_289 |
PMI_RS03335 |
736283 |
737416 |
1 |
rlmC |
23S rRNA (uracil(747)-C(5))-methyltransferase RlmC |
Proteus mirabilis HI4320 |
21 |
group_1641 |
PMI_RS16045 |
3565442 |
3566539 |
-1 |
trmA |
tRNA (uridine(54)-C5)-methyltransferase TrmA |
Proteus mirabilis HI4320 |