COG1995


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1995, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description 4-hydroxy-L-threonine phosphate dehydrogenase PdxA
Function(s) descr. Coenzyme transport and metabolism (H)

Occurence in the database

COG1995 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1100 FBDBKF_06260 85507 86505 1 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase PdxA Morganella morganii S1
1 group_1100 EHELCC_09305 86079 87077 1 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase PdxA Morganella morganii S2
2 group_1100 NLDBIP_09685 86079 87077 1 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase PdxA Morganella morganii S4
3 group_1100 LHKJJB_08070 130161 131159 -1 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase PdxA Morganella morganii S3
4 group_1100 HKOGLL_07620 130161 131159 -1 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase PdxA Morganella morganii S5
5 group_1100 F4V73_RS15660 127584 128582 -1 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase PdxA Morganella psychrotolerans
6 group_1100 PMI_RS11540 2546244 2547245 1 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase PdxA Proteus mirabilis HI4320