COG1960


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1960, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Acyl-CoA dehydrogenase related to the alkylation response protein AidB
Function(s) descr. Lipid transport and metabolism (I)

Occurence in the database

COG1960 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_394 FBDBKF_15110 31218 33668 -1 fadE acyl-CoA dehydrogenase FadE Morganella morganii S1
1 group_394 EHELCC_11135 51238 53688 1 fadE acyl-CoA dehydrogenase FadE Morganella morganii S2
2 group_394 NLDBIP_11480 51238 53688 1 fadE acyl-CoA dehydrogenase FadE Morganella morganii S4
3 group_394 LHKJJB_11340 51238 53688 1 fadE acyl-CoA dehydrogenase FadE Morganella morganii S3
4 group_394 HKOGLL_09950 51238 53688 1 fadE acyl-CoA dehydrogenase FadE Morganella morganii S5
5 group_394 F4V73_RS12340 51554 54004 1 fadE acyl-CoA dehydrogenase FadE Morganella psychrotolerans
6 group_394 PMI_RS01665 396595 399042 -1 fadE acyl-CoA dehydrogenase FadE Proteus mirabilis HI4320
7 group_394 PMI_RS13080 2904061 2905203 1 caiA crotonobetainyl-CoA dehydrogenase Proteus mirabilis HI4320