COG1947


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1947, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description 4-diphosphocytidyl-2C-methyl-D-erythritol kinase
Function(s) descr. Lipid transport and metabolism (I)

Occurence in the database

COG1947 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_608 FBDBKF_01910 69388 70263 -1 ispE 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase Morganella morganii S1
1 group_608 EHELCC_02380 457208 458083 -1 ispE 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase Morganella morganii S2
2 group_608 NLDBIP_01080 222053 222928 1 ispE 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase Morganella morganii S4
3 group_608 LHKJJB_00955 169757 170632 -1 ispE 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase Morganella morganii S3
4 group_608 HKOGLL_00995 175268 176143 -1 ispE 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase Morganella morganii S5
5 group_608 F4V73_RS04255 899606 900484 -1 ispE 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase Morganella psychrotolerans
6 group_608 PMI_RS05250 1147505 1148380 -1 ispE 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase Proteus mirabilis HI4320