COG1878


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1878, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 6 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Kynurenine formamidase
Function(s) descr. Amino acid transport and metabolism (E)

Occurence in the database

COG1878 is associated with 6 different proteins (see tab "Protein list" and "Profile")
The 6 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2857 FBDBKF_10925 11168 11908 1 Kynurenine formamidase Morganella morganii S1
1 group_2857 EHELCC_05300 47560 48300 -1 Kynurenine formamidase Morganella morganii S2
2 group_2857 NLDBIP_05620 88625 89365 -1 Kynurenine formamidase Morganella morganii S4
3 group_2857 LHKJJB_02500 66149 66889 -1 Kynurenine formamidase Morganella morganii S3
4 group_2857 HKOGLL_15880 89589 90329 -1 Kynurenine formamidase Morganella morganii S5
5 group_2857 F4V73_RS08410 1738371 1739111 -1 cyclase family protein Morganella psychrotolerans