COG1868


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1868, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Flagellar motor switch protein FliM
Function(s) descr. Cell motility (N)

Occurence in the database

COG1868 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_457 FBDBKF_00625 104409 105422 1 fliM flagellar motor switch protein FliM Morganella morganii S1
1 group_457 EHELCC_00920 203446 204459 -1 fliM flagellar motor switch protein FliM Morganella morganii S2
2 group_457 NLDBIP_02540 475677 476690 1 fliM flagellar motor switch protein FliM Morganella morganii S4
3 group_457 LHKJJB_04055 82918 83931 1 fliM flagellar motor switch protein FliM Morganella morganii S3
4 group_457 HKOGLL_02990 203651 204664 -1 fliM flagellar motor switch protein FliM Morganella morganii S5
5 group_457 F4V73_RS06635 1381324 1382337 1 fliM flagellar motor switch protein FliM Morganella psychrotolerans
6 group_457 PMI_RS07995 1750611 1751642 1 fliM flagellar motor switch protein FliM Proteus mirabilis HI4320