COG1859


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1859, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 6 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description RNA:NAD 2'-phosphotransferase, TPT1/KptA family
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG1859 is associated with 6 different proteins (see tab "Protein list" and "Profile")
The 6 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2761 FBDBKF_07735 65467 66018 -1 kptA RNA 2'-phosphotransferase Morganella morganii S1
1 group_2761 EHELCC_13565 39661 40212 -1 kptA RNA 2'-phosphotransferase Morganella morganii S2
2 group_2761 NLDBIP_14010 60536 61087 -1 kptA RNA 2'-phosphotransferase Morganella morganii S4
3 group_2761 LHKJJB_08840 98662 99213 1 kptA RNA 2'-phosphotransferase Morganella morganii S3
4 group_2761 HKOGLL_08390 98662 99213 1 kptA RNA 2'-phosphotransferase Morganella morganii S5
5 group_2761 F4V73_RS13345 300008 300544 1 RNA 2'-phosphotransferase Morganella psychrotolerans