COG1576


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1576, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description 23S rRNA pseudoU1915 N3-methylase RlmH
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG1576 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1555 FBDBKF_10075 107008 107478 1 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH Morganella morganii S1
1 group_1555 EHELCC_04875 298973 299443 1 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH Morganella morganii S2
2 group_1555 NLDBIP_04875 298769 299239 1 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH Morganella morganii S4
3 group_1555 LHKJJB_13755 36139 36609 -1 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH Morganella morganii S3
4 group_1555 HKOGLL_12780 107789 108259 1 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH Morganella morganii S5
5 group_1555 F4V73_RS00260 64158 64628 -1 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH Morganella psychrotolerans
6 group_1555 PMI_RS02105 495341 495811 -1 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH Proteus mirabilis HI4320