COG1551


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1551, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description sRNA-binding carbon storage regulator CsrA
Function(s) descr. Signal transduction mechanisms (T)

Occurence in the database

COG1551 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2035 FBDBKF_15245 62752 62943 1 csrA carbon storage regulator CsrA Morganella morganii S1
1 group_2035 EHELCC_11000 21963 22154 -1 csrA carbon storage regulator CsrA Morganella morganii S2
2 group_2035 NLDBIP_11345 21963 22154 -1 csrA carbon storage regulator CsrA Morganella morganii S4
3 group_2035 LHKJJB_11205 21963 22154 -1 csrA carbon storage regulator CsrA Morganella morganii S3
4 group_2035 HKOGLL_09815 21963 22154 -1 csrA carbon storage regulator CsrA Morganella morganii S5
5 group_2035 F4V73_RS12200 21333 21524 -1 csrA carbon storage regulator CsrA Morganella psychrotolerans
6 group_2035 PMI_RS01805 430412 430600 1 csrA carbon storage regulator CsrA Proteus mirabilis HI4320