COG1434


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1434, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Lipid carrier protein ElyC involved in cell wall biogenesis, DUF218 family
Function(s) descr. Cell wall/membrane/envelope biogenesis (M)

Occurence in the database

COG1434 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1237 FBDBKF_07200 113376 114173 -1 elyC envelope biogenesis factor ElyC Morganella morganii S1
1 group_1237 EHELCC_03770 72013 72810 1 elyC envelope biogenesis factor ElyC Morganella morganii S2
2 group_1237 NLDBIP_03770 71809 72606 1 elyC envelope biogenesis factor ElyC Morganella morganii S4
3 group_1237 LHKJJB_09600 71923 72720 1 elyC envelope biogenesis factor ElyC Morganella morganii S3
4 group_1237 HKOGLL_09375 118332 119129 -1 elyC envelope biogenesis factor ElyC Morganella morganii S5
5 group_1237 F4V73_RS01385 301660 302451 -1 elyC envelope biogenesis factor ElyC Morganella psychrotolerans
6 group_1237 PMI_RS03555 793509 794339 -1 elyC envelope biogenesis factor ElyC Proteus mirabilis HI4320
7 group_4599 PMI_RS12375 2743195 2744334 -1 YdcF family protein Proteus mirabilis HI4320