COG1279


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1279, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Arginine exporter protein ArgO
Function(s) descr. Amino acid transport and metabolism (E)

Occurence in the database

COG1279 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_834 FBDBKF_04200 25105 25728 -1 argO arginine exporter ArgO Morganella morganii S1
1 group_834 EHELCC_05490 84562 85185 -1 argO arginine exporter ArgO Morganella morganii S2
2 group_834 NLDBIP_05810 125627 126250 -1 argO arginine exporter ArgO Morganella morganii S4
3 group_834 LHKJJB_02690 103151 103774 -1 argO arginine exporter ArgO Morganella morganii S3
4 group_834 HKOGLL_06165 25015 25638 -1 argO arginine exporter ArgO Morganella morganii S5
5 group_834 F4V73_RS08645 1784786 1785409 -1 argO arginine exporter ArgO Morganella psychrotolerans
6 group_834 PMI_RS10045 2178946 2179569 -1 argO arginine exporter ArgO Proteus mirabilis HI4320