COG1270


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1270, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 6 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Cobalamin biosynthesis protein CobD/CbiB
Function(s) descr. Coenzyme transport and metabolism (H)

Occurence in the database

COG1270 is associated with 6 different proteins (see tab "Protein list" and "Profile")
The 6 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3092 FBDBKF_18910 24969 25928 -1 cbiB adenosylcobinamide-phosphate synthase CbiB Morganella morganii S1
1 group_3092 EHELCC_17105 24970 25929 -1 cbiB adenosylcobinamide-phosphate synthase CbiB Morganella morganii S2
2 group_3092 NLDBIP_18485 24969 25928 -1 cbiB adenosylcobinamide-phosphate synthase CbiB Morganella morganii S4
3 group_3092 LHKJJB_09140 166401 167360 1 cbiB adenosylcobinamide-phosphate synthase CbiB Morganella morganii S3
4 group_3092 HKOGLL_08690 166401 167360 1 cbiB adenosylcobinamide-phosphate synthase CbiB Morganella morganii S5
5 group_3092 F4V73_RS13685 373942 374901 1 cbiB adenosylcobinamide-phosphate synthase CbiB Morganella psychrotolerans