COG1253


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1253, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Hemolysin-related protein, contains CBS domains, UPF0053 family
Function(s) descr. General function prediction only (R)

Occurence in the database

COG1253 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1380 FBDBKF_08530 85520 86890 -1 tlyC Hemolysin-related protein, contains CBS domains, UPF0053 family Morganella morganii S1
1 group_1380 EHELCC_12995 76835 78205 1 tlyC Hemolysin-related protein, contains CBS domains, UPF0053 family Morganella morganii S2
2 group_1380 NLDBIP_13335 76835 78205 1 tlyC Hemolysin-related protein, contains CBS domains, UPF0053 family Morganella morganii S4
3 group_1380 LHKJJB_13220 84238 85608 -1 tlyC Hemolysin-related protein, contains CBS domains, UPF0053 family Morganella morganii S3
4 group_1380 HKOGLL_11810 76835 78205 1 tlyC Hemolysin-related protein, contains CBS domains, UPF0053 family Morganella morganii S5
5 group_1380 F4V73_RS09755 51927 53279 -1 hemolysin family protein Morganella psychrotolerans
6 group_1191 PMI_RS03215 711028 712608 -1 TerC family protein Proteus mirabilis HI4320
7 group_1380 PMI_RS16865 3712697 3714070 -1 hemolysin family protein Proteus mirabilis HI4320