COG1234


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1234, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Ribonuclease BN, tRNA processing enzyme
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG1234 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1843 FBDBKF_13755 43046 43963 1 rnz ribonuclease Z Morganella morganii S1
1 group_1843 EHELCC_11425 127922 128839 1 rnz ribonuclease Z Morganella morganii S2
2 group_1843 NLDBIP_11770 127922 128839 1 rnz ribonuclease Z Morganella morganii S4
3 group_1843 LHKJJB_11630 127922 128839 1 rnz ribonuclease Z Morganella morganii S3
4 group_1843 HKOGLL_10240 127922 128839 1 rnz ribonuclease Z Morganella morganii S5
5 group_1843 F4V73_RS12625 120884 121801 1 rnz ribonuclease Z Morganella psychrotolerans
6 group_1843 PMI_RS01225 300324 301241 -1 rnz ribonuclease Z Proteus mirabilis HI4320