COG1220


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1220, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description ATP-dependent protease HslVU (ClpYQ), ATPase subunit HslU
Function(s) descr. Posttranslational modification, protein turnover, chaperones (O)

Occurence in the database

COG1220 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1759 FBDBKF_12250 110300 111634 1 hslU HslU--HslV peptidase ATPase subunit Morganella morganii S1
1 group_1759 EHELCC_14055 23071 24405 -1 hslU HslU--HslV peptidase ATPase subunit Morganella morganii S2
2 group_1759 NLDBIP_15150 27008 28342 -1 hslU HslU--HslV peptidase ATPase subunit Morganella morganii S4
3 group_1759 LHKJJB_15460 110300 111634 1 hslU HslU--HslV peptidase ATPase subunit Morganella morganii S3
4 group_1759 HKOGLL_14580 96963 98297 1 hslU HslU--HslV peptidase ATPase subunit Morganella morganii S5
5 group_1759 F4V73_RS17080 44006 45340 1 hslU HslU--HslV peptidase ATPase subunit Morganella psychrotolerans
6 group_1759 PMI_RS15900 3529049 3530389 -1 hslU HslU--HslV peptidase ATPase subunit Proteus mirabilis HI4320