COG1185


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1185, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG1185 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1408 FBDBKF_08695 119206 121362 1 pnp polyribonucleotide nucleotidyltransferase Morganella morganii S1
1 group_1408 EHELCC_12830 42363 44519 -1 pnp polyribonucleotide nucleotidyltransferase Morganella morganii S2
2 group_1408 NLDBIP_13170 42363 44519 -1 pnp polyribonucleotide nucleotidyltransferase Morganella morganii S4
3 group_1408 LHKJJB_13385 117924 120080 1 pnp polyribonucleotide nucleotidyltransferase Morganella morganii S3
4 group_1408 HKOGLL_11645 42363 44519 -1 pnp polyribonucleotide nucleotidyltransferase Morganella morganii S5
5 group_1408 F4V73_RS09915 86389 88545 1 pnp polyribonucleotide nucleotidyltransferase Morganella psychrotolerans
6 group_1408 PMI_RS17045 3749787 3751916 1 pnp polyribonucleotide nucleotidyltransferase Proteus mirabilis HI4320