COG1181


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1181, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description D-alanine-D-alanine ligase or related ATP-grasp enzyme
Function(s) descr. Cell wall/membrane/envelope biogenesis (M)
General function prediction only (R)

Occurence in the database

COG1181 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_855 FBDBKF_04325 53138 54055 -1 ddl D-alanine-D-alanine ligase or related ATP-grasp enzyme Morganella morganii S1
1 group_855 EHELCC_05615 112595 113512 -1 ddl D-alanine-D-alanine ligase or related ATP-grasp enzyme Morganella morganii S2
2 group_855 NLDBIP_05935 153660 154577 -1 ddl D-alanine-D-alanine ligase or related ATP-grasp enzyme Morganella morganii S4
3 group_855 LHKJJB_02815 131184 132101 -1 ddl D-alanine-D-alanine ligase or related ATP-grasp enzyme Morganella morganii S3
4 group_855 HKOGLL_06290 53048 53965 -1 ddl D-alanine-D-alanine ligase or related ATP-grasp enzyme Morganella morganii S5
5 group_855 F4V73_RS08770 1814258 1815175 -1 D-alanine--D-alanine ligase Morganella psychrotolerans
6 group_855 PMI_RS06000 1316402 1317502 1 ddlA D-alanine--D-alanine ligase Proteus mirabilis HI4320