COG1160


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1160, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Double Era-like domain GTPase Der
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG1160 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_232 FBDBKF_01035 187091 188596 -1 der ribosome biogenesis GTPase Der Morganella morganii S1
1 group_232 EHELCC_00510 120272 121777 1 der ribosome biogenesis GTPase Der Morganella morganii S2
2 group_232 NLDBIP_02950 558359 559864 -1 der ribosome biogenesis GTPase Der Morganella morganii S4
3 group_232 LHKJJB_04465 165600 167105 -1 der ribosome biogenesis GTPase Der Morganella morganii S3
4 group_232 HKOGLL_02580 120477 121982 1 der ribosome biogenesis GTPase Der Morganella morganii S5
5 group_232 F4V73_RS07110 1475550 1477049 -1 der ribosome biogenesis GTPase Der Morganella psychrotolerans
6 group_232 PMI_RS09085 1977743 1979233 -1 der ribosome biogenesis GTPase Der Proteus mirabilis HI4320