COG1135


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1135, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description ABC-type methionine transport system, ATPase component
Function(s) descr. Amino acid transport and metabolism (E)

Occurence in the database

COG1135 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1041 FBDBKF_05885 1026 2060 1 metN methionine ABC transporter ATP-binding protein MetN Morganella morganii S1
1 group_1041 EHELCC_08930 1598 2632 1 metN methionine ABC transporter ATP-binding protein MetN Morganella morganii S2
2 group_1041 NLDBIP_09310 1598 2632 1 metN methionine ABC transporter ATP-binding protein MetN Morganella morganii S4
3 group_1041 LHKJJB_08445 214606 215640 -1 metN methionine ABC transporter ATP-binding protein MetN Morganella morganii S3
4 group_1041 HKOGLL_07995 214606 215640 -1 metN methionine ABC transporter ATP-binding protein MetN Morganella morganii S5
5 group_1041 F4V73_RS16010 211394 212428 -1 metN methionine ABC transporter ATP-binding protein MetN Morganella psychrotolerans
6 group_1041 PMI_RS11155 2455215 2456246 1 metN methionine ABC transporter ATP-binding protein MetN Proteus mirabilis HI4320