COG1060


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1060, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description 2-iminoacetate synthase ThiH/Menaquinone biosynthesis enzymes MqnC and MqnE
Function(s) descr. Coenzyme transport and metabolism (H)

Occurence in the database

COG1060 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2291 FBDBKF_17610 18316 19443 -1 thiH 2-iminoacetate synthase ThiH Morganella morganii S1
1 group_2291 EHELCC_18095 17692 18819 -1 thiH 2-iminoacetate synthase ThiH Morganella morganii S2
2 group_2291 NLDBIP_18055 19918 21045 1 thiH 2-iminoacetate synthase ThiH Morganella morganii S4
3 group_2291 LHKJJB_18250 19918 21045 1 thiH 2-iminoacetate synthase ThiH Morganella morganii S3
4 group_2291 HKOGLL_17950 17692 18819 -1 thiH 2-iminoacetate synthase ThiH Morganella morganii S5
5 group_2291 F4V73_RS14990 236951 238081 -1 thiH 2-iminoacetate synthase ThiH Morganella psychrotolerans
6 group_2291 PMI_RS13740 3051023 3052141 1 thiH 2-iminoacetate synthase ThiH Proteus mirabilis HI4320