COG1052


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1052, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase
Function(s) descr. Energy production and conversion (C)
Coenzyme transport and metabolism (H)
General function prediction only (R)

Occurence in the database

COG1052 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_660 FBDBKF_02340 157368 158369 -1 ldhA Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase Morganella morganii S1
1 group_1657 FBDBKF_11020 24801 25778 -1 ghrB glyoxylate/hydroxypyruvate reductase GhrB Morganella morganii S1
2 group_660 EHELCC_02810 545188 546189 -1 ldhA Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase Morganella morganii S2
3 group_1657 EHELCC_05205 33690 34667 1 ghrB glyoxylate/hydroxypyruvate reductase GhrB Morganella morganii S2
4 group_660 NLDBIP_00650 133947 134948 1 ldhA Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase Morganella morganii S4
5 group_1657 NLDBIP_05525 74755 75732 1 ghrB glyoxylate/hydroxypyruvate reductase GhrB Morganella morganii S4
6 group_660 LHKJJB_01385 257737 258738 -1 ldhA Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase Morganella morganii S3
7 group_1657 LHKJJB_02405 52279 53256 1 ghrB glyoxylate/hydroxypyruvate reductase GhrB Morganella morganii S3
8 group_660 HKOGLL_01425 263248 264249 -1 ldhA Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase Morganella morganii S5
9 group_1657 HKOGLL_15785 75719 76696 1 ghrB glyoxylate/hydroxypyruvate reductase GhrB Morganella morganii S5
10 group_660 F4V73_RS04720 996006 997010 -1 2-hydroxyacid dehydrogenase Morganella psychrotolerans
11 group_1657 F4V73_RS08210 1707762 1708739 1 ghrB glyoxylate/hydroxypyruvate reductase GhrB Morganella psychrotolerans
12 group_660 PMI_RS05700 1241347 1242345 -1 2-hydroxyacid dehydrogenase Proteus mirabilis HI4320
13 group_1657 PMI_RS09620 2101949 2102908 1 ghrB glyoxylate/hydroxypyruvate reductase GhrB Proteus mirabilis HI4320