COG0703


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0703, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Shikimate kinase
Function(s) descr. Amino acid transport and metabolism (E)

Occurence in the database

COG0703 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1596 FBDBKF_10410 38510 39034 1 aroK shikimate kinase AroK Morganella morganii S1
1 group_2030 FBDBKF_15215 53798 54331 1 aroL shikimate kinase AroL Morganella morganii S1
2 group_2030 EHELCC_11030 30575 31108 -1 aroL shikimate kinase AroL Morganella morganii S2
3 group_1596 EHELCC_14745 38500 39024 1 aroK shikimate kinase AroK Morganella morganii S2
4 group_2030 NLDBIP_11375 30575 31108 -1 aroL shikimate kinase AroL Morganella morganii S4
5 group_1596 NLDBIP_14575 38500 39024 1 aroK shikimate kinase AroK Morganella morganii S4
6 group_2030 LHKJJB_11235 30575 31108 -1 aroL shikimate kinase AroL Morganella morganii S3
7 group_1596 LHKJJB_14770 102702 103226 -1 aroK shikimate kinase AroK Morganella morganii S3
8 group_2030 HKOGLL_09845 30575 31108 -1 aroL shikimate kinase AroL Morganella morganii S5
9 group_1596 HKOGLL_13390 102702 103226 -1 aroK shikimate kinase AroK Morganella morganii S5
10 group_2030 F4V73_RS12230 30050 30583 -1 aroL shikimate kinase AroL Morganella psychrotolerans
11 group_1596 F4V73_RS14105 35206 35730 1 aroK shikimate kinase AroK Morganella psychrotolerans
12 group_2030 PMI_RS01775 420975 421487 1 aroL shikimate kinase AroL Proteus mirabilis HI4320
13 group_1596 PMI_RS14970 3323307 3323828 1 aroK shikimate kinase AroK Proteus mirabilis HI4320