COG0689


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0689, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Ribonuclease PH
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG0689 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2154 FBDBKF_16215 32853 33581 1 rph ribonuclease PH Morganella morganii S1
1 group_2154 EHELCC_16250 32853 33581 1 rph ribonuclease PH Morganella morganii S2
2 group_2154 NLDBIP_17090 28589 29317 -1 rph ribonuclease PH Morganella morganii S4
3 group_2154 LHKJJB_17010 31691 32419 -1 rph ribonuclease PH Morganella morganii S3
4 group_2154 HKOGLL_16830 32853 33581 1 rph ribonuclease PH Morganella morganii S5
5 group_2154 F4V73_RS17385 107379 108107 -1 rph ribonuclease PH Morganella psychrotolerans
6 group_2154 PMI_RS15580 3464895 3465611 1 rph ribonuclease PH Proteus mirabilis HI4320