COG0597


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0597, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Lipoprotein signal peptidase
Function(s) descr. Cell wall/membrane/envelope biogenesis (M)
Intracellular trafficking, secretion, and vesicular transport (U)

Occurence in the database

COG0597 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1129 FBDBKF_06445 127008 127529 -1 lspA signal peptidase II Morganella morganii S1
1 group_1129 EHELCC_09490 127580 128101 -1 lspA signal peptidase II Morganella morganii S2
2 group_1129 NLDBIP_09870 127580 128101 -1 lspA signal peptidase II Morganella morganii S4
3 group_1129 LHKJJB_07885 89137 89658 1 lspA signal peptidase II Morganella morganii S3
4 group_1129 HKOGLL_07435 89137 89658 1 lspA signal peptidase II Morganella morganii S5
5 group_1129 F4V73_RS15480 86050 86598 1 lspA signal peptidase II Morganella psychrotolerans
6 group_1129 PMI_RS00080 28646 29161 1 lspA signal peptidase II Proteus mirabilis HI4320