COG0580


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0580, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family)
Function(s) descr. Carbohydrate transport and metabolism (G)

Occurence in the database

COG0580 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1763 FBDBKF_12270 114250 115068 1 glpF Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family) Morganella morganii S1
1 group_1763 EHELCC_14035 19637 20455 -1 glpF Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family) Morganella morganii S2
2 group_1763 NLDBIP_15130 23574 24392 -1 glpF Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family) Morganella morganii S4
3 group_1763 LHKJJB_15480 114250 115068 1 glpF Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family) Morganella morganii S3
4 group_1763 HKOGLL_14600 100913 101731 1 glpF Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family) Morganella morganii S5
5 group_1763 F4V73_RS17100 48301 49119 1 MIP/aquaporin family protein Morganella psychrotolerans
6 group_1763 PMI_RS15880 3525958 3526773 -1 MIP/aquaporin family protein Proteus mirabilis HI4320