COG0559


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0559, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 6 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Branched-chain amino acid ABC-type transport system, permease component
Function(s) descr. Amino acid transport and metabolism (E)

Occurence in the database

COG0559 is associated with 6 different proteins (see tab "Protein list" and "Profile")
The 6 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2607 FBDBKF_03475 100485 101411 -1 livH high-affinity branched-chain amino acid ABC transporter permease LivH Morganella morganii S1
1 group_2607 EHELCC_07060 145692 146618 1 livH high-affinity branched-chain amino acid ABC transporter permease LivH Morganella morganii S2
2 group_2607 NLDBIP_07385 145565 146491 1 livH high-affinity branched-chain amino acid ABC transporter permease LivH Morganella morganii S4
3 group_2607 LHKJJB_06920 109311 110237 1 livH high-affinity branched-chain amino acid ABC transporter permease LivH Morganella morganii S3
4 group_2607 HKOGLL_04010 123150 124076 -1 livH high-affinity branched-chain amino acid ABC transporter permease LivH Morganella morganii S5
5 group_2607 F4V73_RS11420 427254 428180 1 livH high-affinity branched-chain amino acid ABC transporter permease LivH Morganella psychrotolerans